Mellieha: Gozo, Comino & Blue Lagoon Cruise with Caves

Summary

Malta’s turquoise lagoons, wild caves and sunlit island shores

You’ll drift between Malta’s wildest sea caves and lagoons by boat, swimming through crystal-clear waters at Comino’s Crystal Lagoon and famous Blue Lagoon. With a local guide sharing stories (and jokes), you’ll spot Gozo’s coastline, mysterious rocks, and pause for photos at Santa Maria Caves — all with plenty of time to swim or just soak up that Maltese sunlight.

What’s the experience like?

I’ll admit it — I signed up for the Mellieha boat cruise mostly because I’d seen those photos of the Blue Lagoon everywhere. But standing on the dock that morning, salt in the air and a bunch of us squinting at the sunlight bouncing off the water, I felt this weird mix of excitement and calm. Our guide, Mark (who seemed to know half of Mellieha by name), waved us aboard with a grin. The boat was bigger than I expected, with just enough space to flop down or wander around without bumping elbows.

The first stop was Crystal Lagoon on Comino’s west side. The water really did look unreal — so clear you could see right down to smooth rocks and darting fish. Mark handed out snorkels and made some joke about “watching out for mermaids.” I slid into the water and everything went quiet except for muffled splashes. There was this one moment where I just floated on my back, sun warming my face, thinking how much lighter everything felt out there. After an hour swimming and sunbathing (I may have dozed off), we headed for the Blue Lagoon itself.

Blue Lagoon is busy but honestly? It’s worth it. The sand is almost white and the colors shift every time a cloud moves — pale blue to deep turquoise in seconds. Some people stayed on board but most of us couldn’t resist jumping in again. There were families picnicking on shore, kids shrieking as tiny fish zipped around their toes. Mark mentioned we’d need a quick pass to set foot on land — not a big deal, just something to remember if you’re planning this day trip from Mellieha to Comino and Gozo.

We cruised past Gozo next (didn’t stop long) and then circled Gebla tal Halfa — “the promising rock,” Mark called it — which looked like something straight out of an old legend. He pointed out Elephant Rock too; I didn’t really see the resemblance until someone laughed and showed me their phone photo from a better angle. Last bit before heading back: Santa Maria Caves, all shadows and cool air drifting out over the water. I still think about that silence inside the cave — just a few birds echoing somewhere above us.

Step-by-step itinerary

Day 1 — Boat tour of Comino and Gozo highlights

• Board boat at Mellieha
• Pass Comino Tower
• Stop 1 hour at Crystal Lagoon
• Swim and snorkel at Crystal Lagoon
• Visit Blue Lagoon
• Spend 1+ hour swimming and snorkeling
• Pass island of Gozo and Promising Rock
• Photo stop at Santa Maria Caves
• Photo stop at Elephant Rock
• Return to port

Top questions

How long does the Mellieha Gozo & Blue Lagoon cruise last?

The tour lasts several hours with multiple stops for swimming, snorkeling, sightseeing, and photo breaks before returning to Mellieha port.

Is snorkeling gear included on this boat tour?

Yes, snorkeling gear is provided so you can explore Crystal Lagoon and Blue Lagoon during your stops.

Do I need to register for anything before visiting Blue Lagoon?

You’ll need a free pass if you want to step onto Blue Lagoon’s shore; your guide will help organize this based on your schedule.

Are there restrooms available onboard?

Yes, there are restrooms available on board during the cruise.

Can infants join this boat tour?

Infants can join; they may ride in a pram or stroller but must sit on an adult’s lap during travel.

Is lunch included in this day trip?

No lunch is included; you can bring snacks or buy food at certain stops if available.

Does this cruise include hotel pickup?

No hotel pickup is included; you meet at the designated point in Mellieha.

Are there any health restrictions for joining?

This tour isn’t recommended for pregnant travelers or those with spinal or cardiovascular issues.

What’s included

Your day includes fuel surcharge coverage, use of snorkeling gear for both main lagoon stops, restroom facilities onboard throughout the cruise, guidance from a local expert who shares stories along the way, plus flexible time for swimming or relaxing before returning to port in Mellieha.