Malta: Private Boat Charter to Comino, Gozo & Blue Lagoon

Summary

Private boat day in malta blue lagoon comino caves gozo coast

You’ll float over crystal-clear waters near Comino on your own private boat charter from Malta, swimming in quiet Blue Lagoon corners far from crowds. With your local skipper guiding you to hidden coves and sea caves (snorkel gear included), you’ll feel like these bright blue bays belong just to you—a day that lingers long after you’re dry.

What’s the experience like?

I didn’t really know what to expect when we stepped onto the boat at the edge of Malta—there was this salty breeze and the kind of sunlight that makes you squint even behind sunglasses. Our skipper, Mark, shook my hand with those rough palms you get from years at sea. He grinned and said, “We’ll skip the crowds today.” That sounded good because I’d seen photos of the Blue Lagoon packed shoulder to shoulder. But once we left the harbor, it felt like we’d slipped into a different world—just our little group and that endless blue.

The water around Comino is so clear it almost messes with your head; I kept thinking I could reach down and touch the sand from the boat. We anchored away from everyone else (Mark knew all these quiet spots), and I just flopped straight in—cold at first, then perfect. There was this moment floating there when I heard nothing but water lapping against the hull and someone laughing back on deck. The main keyword here is private boat tour Malta—because honestly, it felt like we had the whole island to ourselves. Mark pointed out Saint Mary’s Tower up on a cliff (“Pirates used to hate that thing,” he joked) and later steered us into one of those sea caves where light bounced off the walls in weird blue patterns. It smelled faintly mineral inside—like wet stone after rain.

We stopped at Santa Marija Bay next; it was quieter than anywhere else we’d seen all week. Some local kids were building sandcastles under tamarisk trees while their dad watched from a distance with a thermos of tea. Mark tossed us snorkel masks (included in the private boat trip to Comino) and pointed out parrotfish darting between rocks—I tried to follow but mostly just ended up swallowing seawater. Lunch was whatever snacks we’d brought thrown into the ice box (which actually had plenty of ice), eaten sprawled across sun-warmed cushions while gulls circled overhead hoping for crumbs.

I still think about that swim-through cave at Cominotto—it’s maybe 50 meters long but feels much longer when you’re halfway through and everything goes quiet except for your own splashing. Coming out into sunlight again was sort of a relief and sort of magic. On the way back past Gozo’s coast, Mark told us how some movies were filmed here (Troy? Madonna? I forget). The route changed a bit because of wind but honestly, I wouldn’t have known if he hadn’t mentioned it. We finished up sunburned, salty-haired, tired in that good way you only get after hours on water—and yeah, already talking about coming back.

Step-by-step itinerary

Day 1 — Private boat tour to Comino and Gozo

• Depart on private boat from Malta
• Anchor at Blue Lagoon for swim and snorkel
• Visit Cominotto Beach and swim through cave
• Cruise along Cominotto reef and sea caves
• Explore Santa Marija Bay and snorkel
• Visit Santa Marija caves nearby
• Pass by Saint Mary's Tower on cliffs
• Enter Crystal Lagoon and snorkel
• Cruise south coast of Gozo including Halfa Rock
• Stop at Hondoq ir-Rumien Bay and hidden inlet
• Visit Qala coast and caves
• Pass Mgarr Harbor Gozo and Fort
• Return to Malta

Top questions

How long does a private boat tour from Malta to Comino & Gozo take?

The duration depends on your preferences and sea conditions; routes are flexible but typically last several hours.

Is snorkeling equipment provided on this Malta private boat trip?

Yes, mask and snorkel are included free of charge for all guests.

Can we choose where to stop during our private boat charter?

The route is flexible based on sea conditions and your group’s wishes—you can discuss stops with your skipper.

Are food or drinks included on board?

No meals are provided but there’s an ice box with ice for any snacks or drinks you bring along.

Does this tour include pickup from our hotel?

No hotel pickup is included; you meet at the departure point near northern Malta beaches or harbors.

What are some highlights visited during this Malta boat charter?

You visit Blue Lagoon, Crystal Lagoon, Santa Marija Bay & caves around Comino plus parts of Gozo’s coast.

Is this private boat trip suitable for families with children?

Yes—it’s suitable for all fitness levels and infants can sit on an adult’s lap or use specialized seats if needed.

How many people can join one private boat charter?

The exact number depends on boat size; prices are per boat not per person—ask when booking for details.

What’s included

Your day includes a professional English-speaking skipper who knows every cove along Malta’s coastline, mask and snorkel gear so you can jump straight into those clear lagoons, shaded seating plus cushioned sun deck for relaxing between swims, an ice box packed with ice for your snacks or drinks, Bluetooth speakers if you want music while cruising—and flexible stops tailored just for your group before heading back salty-haired in the afternoon.