Malta: Private Boat Tour Blue Lagoon, Comino & Crystal Lagoon

Summary

Crystal blue water private boat trip malta comino caves swim stops

You’ll float in Malta’s clearest waters far from crowds, swim straight off your private boat into Blue Lagoon and Crystal Lagoon, and explore hidden caves only locals seem to know about. With snorkeling gear ready and a friendly captain guiding you, expect laughter, salty skin, and memories that stick long after you’ve dried off.

What’s the experience like?

“You see that tower?” our captain asked, nodding up at St. Mary’s Tower as we drifted past Comino. I’d just tried to pronounce its Maltese name — definitely butchered it — and he grinned before telling us how the Knights used it to spot pirates. The sea was almost too blue, like someone had turned up the saturation, and the air smelled faintly of salt and sunscreen. We left from Ċirkewwa (easy enough to find, even if you’re half-asleep), and within minutes, the whole north coast of Malta was behind us — just open water and a handful of boats bobbing in the distance.

The first swim stop was at the Blue Lagoon, but not where everyone else seemed to be shouting over each other on those big ferries. Our boat anchored in a quieter patch; you could actually hear yourself think — or laugh, as my friend did when she realized how cold the water was at first dip. Snorkeling gear was included (which I forgot until our captain handed it over), so we floated around spotting little silver fish darting under the hull. I remember kicking down and seeing sunlight ripple across white sand below — weirdly peaceful, considering how close we were to all that noise onshore.

We cruised past caves with names I couldn’t repeat now if you paid me — one had this green glow inside that made everything feel kind of magical or maybe just surreal after too much sun. There were moments when it got quiet except for the slap of water against rock, especially near Crystal Lagoon. Someone said you could cliff dive here but honestly I just sat on deck with wet hair dripping down my back, watching our guide point out where octopus sometimes hide near Cominotto Reef. He said only one person lives on Comino full time; I still think about that kind of solitude.

Time blurred a bit after that — swimming off the boat again near Imriek Reef, trying to dry off in the breeze (not really working), then drifting by the P31 wreck while our captain explained how it ended up there. The sun bounced off everything; I kept squinting even behind sunglasses. We finished back at Ċirkewwa with salty skin and hair tangled by wind, sort of wishing we’d brought sandwiches because all that swimming makes you hungry, you know?

Step-by-step itinerary

Day 1 — Private boat tour to Comino lagoons

• Depart from Cirkewwa harbor
• Pass St. Mary’s Tower viewpoint
• Anchor at Blue Lagoon quiet area
• Swim and snorkel in Blue Lagoon
• Visit Crystal Lagoon for swimming
• Explore Crystal Lagoon Cave by boat
• Stop at Cominotto Island beach
• Cruise around Comino Islets
• Return to Cirkewwa harbor

Top questions

Where does the private boat tour start?

The tour starts from either Ċirkewwa in Malta or Mġarr Harbour in Gozo.

Is snorkeling equipment included on this private boat trip?

Yes, use of snorkeling equipment is included for all guests.

How long does it take to reach Comino from Malta?

It takes just a few minutes by private boat from Ċirkewwa to Comino.

Are there stops for swimming during the tour?

Yes, there are multiple swim stops including Blue Lagoon and Crystal Lagoon.

Can I ask the captain to customize our route?

Yes, your captain can customize stops based on your preferences.

Is lunch provided during this private boat tour?

No lunch is provided; guests should bring their own snacks if needed.

Are service animals allowed on board?

Yes, service animals are allowed during this tour.

Is this private boat trip suitable for all fitness levels?

The trip is suitable for all physical fitness levels.

What’s included

Your day includes use of snorkeling equipment throughout the private boat trip plus flexible swim stops at places like Blue Lagoon and Crystal Lagoon before returning comfortably to your chosen departure point in Malta or Gozo.