Malta: Private Blue Lagoon, Gozo & Comino Boat Charter

Summary

Private boat day to Malta’s lagoons caves and Gozo shores

You’ll board your own private boat from Malta or Gozo with a local captain who knows every cove by heart. Swim in the Blue Lagoon before crowds arrive, snorkel clear waters around Comino caves, and relax in quiet bays like Santa Marija. With pickup included and all gear sorted, you get a day that feels both easygoing and personal — honestly hard to forget.

What’s the experience like?

The morning didn’t exactly start smooth — I’d forgotten my hat (classic), and the sun was already sharp when we met our captain at Cirkewwa port. He grinned, handed me a spare, and just like that, we were off. The engine hummed under us as Malta’s coast slid away, the air smelling faintly salty with something almost herbal on the breeze. I kept thinking: this is what people mean when they talk about “Mediterranean blue,” but it’s still a shock when you see it for yourself.

Our guide — Mark, born on Gozo — steered us straight past the crowds at the Blue Lagoon. “We’ll come back when it’s quieter,” he promised, and took us instead to Crystal Lagoon where the water felt cold and soft at once. I tried snorkeling but mostly floated around staring up at limestone cliffs while someone else braved a cliff jump (not me). There was this odd silence out there except for distant laughter echoing off rocks. At one point Mark pointed out Cominotto reef; I still can’t pronounce it right, but he didn’t seem to mind.

Lunch wasn’t fancy — just sandwiches we’d brought along — but eating them with wet hands and sea spray in my hair made them taste better than any café lunch. We drifted into little bays like Santa Marija and Hondoq, where the only sounds were gentle waves and someone from another boat singing in Maltese (I wish I knew what about). On Gozo, Mark told us stories about Halfa Rock that made me want to stay longer. The sun got lower, turning everything gold and sleepy. I didn’t expect to feel so relaxed — or maybe just grateful for not being part of the big tour groups we saw from a distance.

Step-by-step itinerary

Day 1 — Private boat trip around Malta and Gozo

• Pick up from Cirkewwa or Mgarr port
• Cruise to Blue Lagoon
• Swim and snorkel in Blue Lagoon
• Visit Crystal Lagoon for snorkeling and cliff diving
• Explore Comino Caves and Cominotto reef
• Stop at San Niklaw Bay and Santa Marija Bay
• Visit Santa Marija Caves and Elephant Rock
• Explore Popeye Cave
• Travel to Gozo Island southern shores
• Visit Mgarr Harbour and Hondoq Bay
• See Halfa Rock and Zreizaq Beach
• Relax and sunbathe in secluded bays
• Return to port

Top questions

Where does the Malta private boat trip start?

The tour includes pickup from either Cirkewwa port in Malta or Mgarr port in Gozo.

Is snorkeling equipment provided on this private boat tour?

Yes, snorkeling gear is included for all guests during the charter.

Can we customize our itinerary for the Malta boat charter?

Yes, since this is a private tour you can tailor stops and timing with your captain.

What are some places visited on this Malta boat trip?

You’ll visit Blue Lagoon, Crystal Lagoon, Comino caves, Cominotto reef, Santa Marija Bay, Hondoq Bay on Gozo, Halfa Rock and more.

Are permits or entry fees included in the price?

All necessary permits as well as port and marina fees are included in your booking.

Is lunch provided during the day trip?

No formal lunch is included; guests usually bring their own food or snacks onboard.

How long does the private boat trip last?

The exact duration depends on your preferences; you can discuss timing directly with your captain when booking.

What’s included

Your day includes pickup from Cirkewwa or Mgarr port (your choice), all required permits for cruising these waters, use of snorkeling equipment if you want it, plus covered marina fees so there are no surprises — just bring snacks or lunch along for yourself before heading back whenever you’re ready.